rs29266527 SNP Detail

Summary

• ID
  rs29266527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:134619629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGTTGG CATTTATTTG
  TTGGAAAAGA TCCTCATTAT GATCTTTTCA CAAACTCCTT CTCTTGCTCG ATGGCTAGGG
  AAAGAAAAAT ACAAAAAAAT ATCATTAGAA GGAATGTTCT TTTCTTTTTT TCTTATTTAC
  TTGTTTAGCT TTTCTTAATA TTAAGTTCAG TTTCTTCTAA AAGATCTGCT TACTAAGTCT
  Y
  GAAGGGCTGA TTAACATGCC TTTTCATTTA CAATGCAAAG GCACTAACCA CATATCCTCA
  TAGTGGAGGT TTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC
  GTGTGCCTTA GAATAATGTA TATATATATA TATTTGAGTG ATAGTTGAGG AGTAAGGAAA
  ACATTTCTTT CAGCTTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38460149	NES09761420	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29266527					SNP	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38460149	NES09761420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:134619629 () rs orientation: forward

Symbol	Name	Function Class
Tmsb15a	thymosin beta 15a	within coordinates
Tssr164175	transcription start site region 164175	1747 bp downstream