rs29267869 SNP Detail

Summary

• ID
  rs29267869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133912940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGAATA AGAGGCAAAT
  ATAAATATGA AATTCTCATA GGATTAAAAA TACTGTATTT TCAAACTTTT AAGGCCTTTT
  GATAATACTA AAGTTGGTCT GCAATTTTAA AATTTATTGG CAAAAGTAAC TAAGAATATC
  ATGTAACCAT CTTCACATTG TGAATAAAGA GTATTCTTTA GTTTGATTGC TTACAAGATT
  Y
  ACCAAAATTT GGAGCTCTCT TTAGATAGAA TTCTGGAACT TTGTTCATTT AGTTAGCATT
  TTGTTTTTAA GTTACACCCA TGTTGCTACT TGAGGCTGTA GTTATTCACT GGGAATAGTG
  GACAAACTCC TTCTATTTCC TTGTTAAGAG ACACACTCAG CAGACCTCTT TTGTGTTTGC
  TCTCCTTTCC AGTCACATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38461361	NES09772235	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29267869					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38461361	NES09772235	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133912940 () rs orientation: forward

Symbol	Name	Function Class
Gm56682	predicted gene, 56682	within coordinates
Rr5387	regulatory region 5387	340 bp distal