rs29267870 SNP Detail

Summary

• ID
  rs29267870
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133912855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTGGGTT GTTTAAAAAC
  AAACAAACAG AGGACATGAG GTTGGAAGAG GGTAGGAAGA AGGTAACACA TCTGGAAGGA
  CTTAGGGGAG GAATAAGAGG CAAATATAAA TATGAAATTC TCATAGGATT AAAAATACTG
  TATTTTCAAA CTTTTAAGGC CTTTTGATAA TACTAAAGTT GGTCTGCAAT TTTAAAATTT
  M
  TTGGCAAAAG TAACTAAGAA TATCATGTAA CCATCTTCAC ATTGTGAATA AAGAGTATTC
  TTTAGTTTGA TTGCTTACAA GATTTACCAA AATTTGGAGC TCTCTTTAGA TAGAATTCTG
  GAACTTTGTT CATTTAGTTA GCATTTTGTT TTTAAGTTAC ACCCATGTTG CTACTTGAGG
  CTGTAGTTAT TCACTGGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38461362	NES09772234	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29267870					SNP	A	A	A	A	A	C	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38461362	NES09772234	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133912855 () rs orientation: forward

Symbol	Name	Function Class
Gm56682	predicted gene, 56682	within coordinates
Rr5387	regulatory region 5387	255 bp distal