rs29267871 SNP Detail

Summary

• ID
  rs29267871
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133910948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGATTGC CTATGCCAAA
  ACACATTATT TAAAAGTAAA TGCAATTATA GTTATTTTCT AAAGAAATTG TTTTAAATAT
  AGACCAAGTA ATTAAACATA ATTTTTAAAA AAAATAACAC AAAATTTGTT TTGGACTTCA
  AATAATGGTT ATTATTATAC CTAAATTAAA TTTGAAAGAG GTCAAGCTGT TATCCAGCAA
  W
  GGCATTTATT TTTAATTTAA AAAGTATTTA GTTGTGTGTG TGTGTGCACG TGCGTGCACG
  CGTGTGCTTT AGTGTAAGTA ATTACACTGT AGTTCATGCA GGAGATCAAG ATCAGAAGAG
  GTGTCAGAAT ACCTGGGACT GAAGCAGACT GTTATGAACT GCCTGCCATA TGGGTGCTAA
  ACCCAAGTTC TTTGCAAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38461363	NES09772377	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29267871					SNP	T	T	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38461363	NES09772377	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133910948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22946	CpG island 22946	821 bp distal
Gm56682	predicted gene, 56682	within coordinates
Rr5387	regulatory region 5387	853 bp proximal
Rr8270	regulatory region 8270	347 bp distal
Tssr162015	transcription start site region 162015	1342 bp downstream
Tssr164162	transcription start site region 164162	974 bp upstream
Tssr164163	transcription start site region 164163	963 bp upstream
Zmat1	zinc finger, matrin type 1	990 bp upstream