rs29267873 SNP Detail

Summary

• ID
  rs29267873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133910660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAACCC CTTAGAACTC
  CAATATTTTA TGTTCATTTC CCTGCCTTTA AAACATACAA ATTGTCACGT AGATGTATGC
  TTAAATACTG TTATTTTTGT TATAATAAAA AATACACACT TAAAACCAGC TATTGCAAAA
  CTATTTTTTG TTTTGAAATT TTCATATAAT TGTGTAGTTA ATGGAAATAA TCTAATTGGC
  Y
  GGCTTGTCGT GAAGCATTAT TTATATTTTC GAATTGCCCA ATATTTCAGT TTATTGATCT
  CAAGCATTAA ATTTTAAAGA TTTTGCAAAA TGATTGCCTA TGCCAAAACA CATTATTTAA
  AAGTAAATGC AATTATAGTT ATTTTCTAAA GAAATTGTTT TAAATATAGA CCAAGTAATT
  AAACATAATT TTTAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38461365	NES09772375	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29267873					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38461365	NES09772375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133910660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22946	CpG island 22946	533 bp distal
Gm56682	predicted gene, 56682	within coordinates
Tssr162015	transcription start site region 162015	1054 bp downstream
Tssr164162	transcription start site region 164162	686 bp upstream
Tssr164163	transcription start site region 164163	675 bp upstream
Zmat1	zinc finger, matrin type 1	702 bp upstream