rs29268097 SNP Detail

Summary

• ID
  rs29268097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133909990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGCCAGCTG AGCTACAGCT TTCGGCGACG CCACCGCCGC
  CGCCGCCGTC GCAGCCTGGC GCGCACAATT GCACTGGAGT CCGGATTCCG TTAGGCTTTT
  K
  TTTTTTTAGC CCCGCCTTCG CCCAAGCTCC ACCTCCCATC CTTTGCTTCC TCTTTGGCAA
  CCCCAGCCTC GCTCTGGCTC CCCTCATCCT CCAATAGGAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss38461369	NES09772370	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs29268097					SNP	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38461369	NES09772370	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133909990 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22946	CpG island 22946	within coordinates
Gm56682	predicted gene, 56682	within coordinates
Tssr162015	transcription start site region 162015	384 bp downstream
Tssr164162	transcription start site region 164162	16 bp upstream
Tssr164163	transcription start site region 164163	5 bp upstream
Zmat1	zinc finger, matrin type 1	32 bp upstream