rs29268177 SNP Detail

Summary

• ID
  rs29268177
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133865267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCGGCCAC ATTAATAAAA
  TGTCCCTTGG CCTCCATGGA GAGCCCTCAC CTCAGCATCT CAGCGGGCCA CCTTTGAGCA
  AACCTGTAGA ACCATGTAGG TCTTCTAACA TAAATCCCCC TACCCTACTA CGGGCGAGAT
  AGAAAAGTCC GAAGGACTTT AGTCAGAGCC GAGCCAGAAG GAATCACAGC TCTAAAGATA
  M
  GCTCTTCCCC AGATATGCCG CCGCCGCCAT CAGTATAACT AATGGCGGGA GCTTGGTACT
  TACTCTTCAG AGATGGGTAT AAGTAATAAA AACTACTTTG GCACCCTACC TGCCTTGCAG
  ATTCTCTTTT GGAGAGGACC ACATTACACC AACGACTACA CTGAACGGCT GCTCGCTCGC
  TCTGTCTAGT CTCCAGGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ
ss38461469	NES09773422	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ
rs29268177					SNP	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38461469	NES09773422	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133865267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22945	CpG island 22945	501 bp distal
Nxf2	nuclear RNA export factor 2	within coordinates
Rr693643	regulatory region 693643	633 bp distal
Rr693644	regulatory region 693644	532 bp distal
Tssr164159	transcription start site region 164159	177 bp downstream
Tssr164160	transcription start site region 164160	224 bp downstream