rs29268178 SNP Detail

Summary

• ID
  rs29268178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133864868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGCTCC CCACGCCTTG
  CCTCCCTAAG GTGACCCGCT TCGCCTTTAG GCGGTCTTTG TTTTCCCGCT TAGAAGCTTG
  GCCACCTCGA TGTGACTCTG TCACCCTCAG AAGTCTACTT TGCCGCTTTG CCTACTTTTG
  GGCCTTTCCC ACTAGTAACT TTCGAACTTG GAAGCGGTGG GTCCCAGGCG TTTTGCCAAA
  Y
  GGCCACTGTC ACCACTTTTG GTCCCCTCTG CTGCTTTTCT GTGGTGGACT CTCGCTGCTT
  TCCCACCATT TCCCGCCTCT TGCCTCTGGT GTCGTGTCCT TCCTTGACCT CACCCTCAGT
  CTCACCACCA CAAAACTAGA TGGCCGATGA CTACACCCCA CTCTTTGCAC ACAGGGTTTC
  CCTATCATAC GTGAAAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NZW/LacJ
ss38461470	NES09773421	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NZW/LacJ
rs29268178					SNP	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38461470	NES09773421	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133864868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22945	CpG island 22945	102 bp distal
Nxf2	nuclear RNA export factor 2	within coordinates
Rr693643	regulatory region 693643	234 bp distal
Rr693644	regulatory region 693644	133 bp distal
Tssr164159	transcription start site region 164159	576 bp downstream
Tssr164160	transcription start site region 164160	623 bp downstream