rs29268214 SNP Detail

Summary

• ID
  rs29268214
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133935016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAAGAAA CTGTATGGAG
  AGCCTTTCCC CTGTCTGGCA ACTAAGGAAT GGTCTATGAT AAACCTGTCT GCCCTAGTCA
  TTGGATCGAA GTGACACATT CAAGTATCTG TTTAGGTCAG GACAGCCAAA CCCAACTGAC
  CCTGCCGATG AGAGTATTAG TTCCCAGTTC AGTGGAGGTT CAGTCTGACT CCAGTGACTT
  K
  TCTCCAGATC CCATACAGTG CTTGGCACTG AACACTGGCA CAGGTAAAGG TGGGAAACTT
  ATTTTAAAAT TAATAGTTAT ATGTTTATTT GTATATCAGG AGCCCATATG GAAATCAGAG
  AGCAACTTGA GGGAGTTGTT ATTTTCCTTC CACATTCTAG GTCTCGGGAA TGGAATCAAG
  CCTCAGACTT TGGCAGCAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38461266	NES09771479	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29268214					SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38461266	NES09771479	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133935016 () rs orientation: forward

Symbol	Name	Function Class
3632454L22Rik	RIKEN cDNA 3632454L22 gene	within coordinates
Cpgi22947	CpG island 22947	1609 bp proximal
Rr2892	regulatory region 2892	816 bp distal
Rr2893	regulatory region 2893	1985 bp proximal
Rr8271	regulatory region 8271	1185 bp proximal
Tssr164165	transcription start site region 164165	1811 bp downstream
Tssr164166	transcription start site region 164166	1824 bp downstream