rs29268218 SNP Detail

Summary

• ID
  rs29268218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133934578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCTAATC TAACCAAGGA
  TATTTCTGAA AGACCTTTGC AATGAAAACT TTAAAGCACT GGAGAAAATG GACAGAATTA
  ACATTGACAT AGATTATGGC TATATTACTG AAAGTGTTGT ACAGAGTCAG TACACTAGCC
  AAAGCAGGAT AACACAATAC CTAGAATAGT GTAAACTCGG GTTCTCAAAT TTGACACAAG
  Y
  CACGTCTCCC ATCCTCCCCT TACTCTGTCT TGCTATTCTT TCTGATGTAA ACTTATTATG
  TAGCCCTGGC TTGCCTCCAG TGCCCAATCT TCCTGGATCA GTACACTGAA AGTTTAGATT
  GCAGGTGTGT GTCACCACGC CCATCTTTTC TTTTCCTCAA ACTTAATCTG AAATTCTTCA
  CTGAATGCAG TTGGGATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38461270	NES09771496	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29268218					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38461270	NES09771496	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133934578 () rs orientation: forward

Symbol	Name	Function Class
3632454L22Rik	RIKEN cDNA 3632454L22 gene	within coordinates
Rr2892	regulatory region 2892	378 bp distal
Rr8271	regulatory region 8271	1623 bp proximal