rs29268362 SNP Detail

Summary

• ID
  rs29268362
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:134010105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTTGCTC TCAGAAAGCT
  CACCCTTGAC TCTGCAGAGC CTTGCAGAGC TCTTCCCTCA GCACTGCAGA ACCTGCTTAG
  AAAACTGTAA CTTTTCATCT CTCTGCCTCC TATCTCTCCC CAACACTAAG CGTGCTGTTT
  GTCTGATGCC CTTGGCTTGC CTGCTGTTTC TCTGTAGCTG TCCCATCCTC CTTTGCCTTA
  W
  GACAACTTTG TAACAACTTG GTTCTCTCTC CCACTTCTCT AACTTCCTCC TCTGGAGAGC
  TGCCAAGATC TACTGCCTGC CTCCCCTGAA GATTGCCCCT CTAAATTGAT TAAAAAATGT
  CCTTGAGCTT CCTTCTGACT CCATTTCTCA GTTATTTTAT GAACAAGTCT AAGACCTCAA
  AACAGGGACC TCCGATTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38460984	NES09769231	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29268362					SNP	A	A	A	A	A	A	T	A	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38460984	NES09769231	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:134010105 () rs orientation: forward

Symbol	Name	Function Class
Rr2897	regulatory region 2897	1496 bp proximal
Rr9167	regulatory region 9167	within coordinates