rs29268506 SNP Detail

Summary

• ID
  rs29268506
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133932444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAGGAT TACCTTAGTC
  AAAAAGCATC CCCTCAGAAG GACATTGAGC AAAAGACAAA GTAACTGGTA AATACCAGCA
  ATATCCATTC CCAGGCAACT TAAGTAAAGG AACTAACACA AACCAATGAC TGGATAAGCA
  TTGTTTCTTT CCAAATGATA GATGATAAGG TGATGGACTT CCCCATGCTT GTGTGCCCCA
  W
  TGCCAACAAA TCCAAGATTA GAATTCATAT TCTCTTTATG TTTCTTCCAG TCATACCATC
  TTCACAGGAT TTGTTTTTAA ATTTACAATG CATGGATTTT TGTTTTAATT AGCCACCTAG
  GGATCCCTCC CATCTGTAGA CATCAAACCC CAACACTGTT GCTGTTGCCA AGAGGCACTT
  GCTGACAGGA ACCTGGTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38461278	NES09771575	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29268506					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38461278	NES09771575	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133932444 () rs orientation: forward

Symbol	Name	Function Class
3632454L22Rik	RIKEN cDNA 3632454L22 gene	within coordinates
Rr2892	regulatory region 2892	1557 bp proximal