rs29268935 SNP Detail

Summary

• ID
  rs29268935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133503241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTCCAT GCTTATGTTT
  TTGTTCTAAG ATTATTTTTG TCCCAATATA GTGAGCTTAA AGAATTTTTA AAAAATGAAA
  TTGTCTAGTA TTAAAGGGTA AATGGCATTC ATTCCCTTGG GCTCCATTTG TTCTTATAGT
  TTATCTTATT GCAAAGCTAC TTTCAGACCG TCTCTCACCC AATGAAACTG TACGTTACAT
  Y
  CTTGAACATT TTAATAGAGG TAGGATTATA CTATGGATGA TCATTCATTC ATTCATTCAT
  TCAATTTATT TTGGAAATCT CTCCAGGTAG GGGCAGATTG CTTAGTCAGT AATTGCATAG
  AATTCCATTT AAGGTAGAAA TATATTTCAT CCGTTTCTCT TGACCATTTA GTCTTCTGAT
  TTGTTTTTTA CCATTACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38462399	NES09782350	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29268935					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38462399	NES09782350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133503241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	996 bp distal
Gla	galactosidase, alpha	1534 bp upstream
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	within coordinates
Rr406169	regulatory region 406169	1208 bp downstream
Tssr162002	transcription start site region 162002	1226 bp downstream
Tssr162003	transcription start site region 162003	1211 bp downstream
Tssr164152	transcription start site region 164152	1527 bp upstream
Tssr164153	transcription start site region 164153	1502 bp upstream
Tssr164154	transcription start site region 164154	1337 bp upstream
Tssr164155	transcription start site region 164155	979 bp upstream