rs29268936 SNP Detail

Summary

• ID
  rs29268936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133503089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTGATCC CCATCCCTGC ACACAAAAAA AGTTTTAAAA
  AATTTTTTGT CATATTTTCC ATGCTTATGT TTTTGTTCTA AGATTATTTT TGTCCCAATA
  Y
  AGTGAGCTTA AAGAATTTTT AAAAAATGAA ATTGTCTAGT ATTAAAGGGT AAATGGCATT
  CATTCCCTTG GGCTCCATTT GTTCTTATAG TTTATCTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38462400	NES09782349	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	C	T	T	T	C	T
ss134468337	ENSMUSSNP1309303	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29268936					SNP	C	C	C	C	C	T	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38462400	NES09782349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133503089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	844 bp distal
Gla	galactosidase, alpha	1382 bp upstream
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	within coordinates
Rr406169	regulatory region 406169	1056 bp downstream
Tssr162002	transcription start site region 162002	1074 bp downstream
Tssr162003	transcription start site region 162003	1059 bp downstream
Tssr164152	transcription start site region 164152	1375 bp upstream
Tssr164153	transcription start site region 164153	1350 bp upstream
Tssr164154	transcription start site region 164154	1185 bp upstream
Tssr164155	transcription start site region 164155	827 bp upstream