rs29268938 SNP Detail

Summary

• ID
  rs29268938
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133502682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCCGGA TGGTCGTGAG
  GGGTCCCGAG GGAATTCCAT CCTTGAAAGT ATGAGTTGGG CAAGTGATGC GTGCTCGAGA
  GGCGCCCAAT AAATGCTTTC ACTTAATTAT TTGAACGTTT GTTTTTTTCT GCTTATCACG
  ATCTACGAGT TGAATTTTGG TCGTTCGAAA AGTAATAAAT TCGTTTAAAA GGGACACAGT
  W
  CAGCACTACC CAACTCTTAT TACAGTTACC AAAAGTGTGC TGTAACACGG GTATAAGTAC
  ACGGATGCTT AACTCATAAA TTTTGGTTAC TACGTTAGGT AACAGAATCC TGGTGGCCTT
  CTCAGGAAAC GTAAGGAAGC CAAACCTCTC AACCACTAGG GAGGACCTAT TGAGACAGAA
  TGCTGTAGAA ATCACCATCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38462402	NES09782347	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29268938					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38462402	NES09782347	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133502682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	437 bp distal
Gla	galactosidase, alpha	975 bp upstream
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	within coordinates
Rr406169	regulatory region 406169	649 bp downstream
Tssr162002	transcription start site region 162002	667 bp downstream
Tssr162003	transcription start site region 162003	652 bp downstream
Tssr164150	transcription start site region 164150	1632 bp upstream
Tssr164151	transcription start site region 164151	1599 bp upstream
Tssr164152	transcription start site region 164152	968 bp upstream
Tssr164153	transcription start site region 164153	943 bp upstream
Tssr164154	transcription start site region 164154	778 bp upstream
Tssr164155	transcription start site region 164155	420 bp upstream