rs29268939 SNP Detail

Summary

• ID
  rs29268939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133502644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTACCGC TCCATCCATT
  CATGCGCTCA ACTATTCAAA CTGCCGGATG GTCGTGAGGG GTCCCGAGGG AATTCCATCC
  TTGAAAGTAT GAGTTGGGCA AGTGATGCGT GCTCGAGAGG CGCCCAATAA ATGCTTTCAC
  TTAATTATTT GAACGTTTGT TTTTTTCTGC TTATCACGAT CTACGAGTTG AATTTTGGTC
  S
  TTCGAAAAGT AATAAATTCG TTTAAAAGGG ACACAGTTCA GCACTACCCA ACTCTTATTA
  CAGTTACCAA AAGTGTGCTG TAACACGGGT ATAAGTACAC GGATGCTTAA CTCATAAATT
  TTGGTTACTA CGTTAGGTAA CAGAATCCTG GTGGCCTTCT CAGGAAACGT AAGGAAGCCA
  AACCTCTCAA CCACTAGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38462403	NES09782346	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29268939					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38462403	NES09782346	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133502644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	399 bp distal
Gla	galactosidase, alpha	937 bp upstream
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	within coordinates
Rr406169	regulatory region 406169	611 bp downstream
Tssr162002	transcription start site region 162002	629 bp downstream
Tssr162003	transcription start site region 162003	614 bp downstream
Tssr164150	transcription start site region 164150	1594 bp upstream
Tssr164151	transcription start site region 164151	1561 bp upstream
Tssr164152	transcription start site region 164152	930 bp upstream
Tssr164153	transcription start site region 164153	905 bp upstream
Tssr164154	transcription start site region 164154	740 bp upstream
Tssr164155	transcription start site region 164155	382 bp upstream