rs29268940 SNP Detail

Summary

• ID
  rs29268940
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133502438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCAAGAGGG ACCCGTAAGA TGAAAAGCGT TTCAAACACG
  GTCGGTCCGG AGTTAGGGAA AAAAAGAAAA GAAAGAAAAA TAAACAACAG AGTGAGACCC
  K
  CGGTCTGAGT ACCGCTCCAT CCATTCATGC GCTCAACTAT TCAAACTGCC GGATGGTCGT
  GAGGGGTCCC GAGGGAATTC CATCCTTGAA AGTATGAGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38462404	NES09782345	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	G	T	G	G	G	G	G
ss134468331	ENSMUSSNP1136882	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29268940					SNP	T	T	T	T	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38462404	NES09782345	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133502438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	193 bp distal
Gla	galactosidase, alpha	731 bp upstream
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	within coordinates
Rr406169	regulatory region 406169	405 bp downstream
Tssr162002	transcription start site region 162002	423 bp downstream
Tssr162003	transcription start site region 162003	408 bp downstream
Tssr164150	transcription start site region 164150	1388 bp upstream
Tssr164151	transcription start site region 164151	1355 bp upstream
Tssr164152	transcription start site region 164152	724 bp upstream
Tssr164153	transcription start site region 164153	699 bp upstream
Tssr164154	transcription start site region 164154	534 bp upstream
Tssr164155	transcription start site region 164155	176 bp upstream