rs29268941 SNP Detail

Summary

• ID
  rs29268941
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133502411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTCGGGGG ACTTTTCCCC CTCTGCCCGC AAGAGGGACC
  CGTAAGATGA AAAGCGTTTC AAACACGGTC GGTCCGGAGT TAGGGAAAAA AAGAAAAGAA
  W
  GAAAAATAAA CAACAGAGTG AGACCCGCGG TCTGAGTACC GCTCCATCCA TTCATGCGCT
  CAACTATTCA AACTGCCGGA TGGTCGTGAG GGGTCCCGAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss38462405	NES09782344	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs29268941					SNP	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38462405	NES09782344	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133502411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	166 bp distal
Gla	galactosidase, alpha	704 bp upstream
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	within coordinates
Rr406169	regulatory region 406169	378 bp downstream
Tssr162002	transcription start site region 162002	396 bp downstream
Tssr162003	transcription start site region 162003	381 bp downstream
Tssr164150	transcription start site region 164150	1361 bp upstream
Tssr164151	transcription start site region 164151	1328 bp upstream
Tssr164152	transcription start site region 164152	697 bp upstream
Tssr164153	transcription start site region 164153	672 bp upstream
Tssr164154	transcription start site region 164154	507 bp upstream
Tssr164155	transcription start site region 164155	149 bp upstream