rs29269064 SNP Detail

Summary

• ID
  rs29269064
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133502048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATTGGC GCTCTCTTTA
  CCTTGGCCCG CCCCATTTCC AAAGGAGGAG GAAGTGCGGC ATCTCAGTGA TCCCGAGTTT
  AAGCCGAGAG TTGCTCACGT GACCGAGATC TCACATGACG TAGATGCTCA CGTGATCAAT
  CGCTTACGTG AGCAGAAGTA GTTCTGGTCG TCGTCTATCG TCTCGCTATA GCCGTTTGAG
  S
  GAAGAAGAAG GAAAATCCCC CGGTCTCGTT GGAGGTTGGT GTGCGGGTGG GAACTGGGGA
  CCCCCGGGTG GTGATAAGGA AGAGCAGAGT CGGGTCCGGG GTCGCCTCCG CCTTTTTCGT
  GCTCGGCTCC CCCCCCAAAC CCCGTCCTCC TCCCCCCTCC CCCTCCCCGA GTGCCGGGAA
  GCGGCCTGCG CTGCGTCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38462406	NES09782342	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29269064					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38462406	NES09782342	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133502048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	within coordinates
Gla	galactosidase, alpha	341 bp upstream
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	within coordinates
Rr406169	regulatory region 406169	15 bp downstream
Rr693597	regulatory region 693597	3 bp distal
Rr693598	regulatory region 693598	within coordinates
Tssr162002	transcription start site region 162002	33 bp downstream
Tssr162003	transcription start site region 162003	18 bp downstream
Tssr164150	transcription start site region 164150	998 bp upstream
Tssr164151	transcription start site region 164151	965 bp upstream
Tssr164152	transcription start site region 164152	334 bp upstream
Tssr164153	transcription start site region 164153	309 bp upstream
Tssr164154	transcription start site region 164154	144 bp upstream
Tssr164155	transcription start site region 164155	209 bp downstream