rs29269065 SNP Detail

Summary

• ID
  rs29269065
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133499948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATGAATGC TTCGCCTAAA GCCACACTAA CGTAGAATTT
  GAACCTAGGC AGGGCACTGG GGTCTTGATG GTACTCACAC ATAAAAGTCA TGCTATTTTT
  K
  GGGAGTCAAT TAGAAATCTG TGTTTTCATT TACATAATAA ACAACTGCAG ATTTGTATAT
  AGATATTCAC CATGATTATT TCTGGATGAT GAAATAAAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38462408	NES09782368	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	T	G	G	T	T	T	G	T	T
ss134468328	ENSMUSSNP2451879	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29269065					SNP	G	G	G	G	G	T	G	G	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38462408	NES09782368	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133499948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	1877 bp proximal
Gla	galactosidase, alpha	within coordinates
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	1980 bp upstream
Rr406169	regulatory region 406169	1784 bp upstream
Tssr164150	transcription start site region 164150	1054 bp downstream
Tssr164151	transcription start site region 164151	1105 bp downstream
Tssr164152	transcription start site region 164152	1729 bp downstream
Tssr164153	transcription start site region 164153	1777 bp downstream
Tssr164154	transcription start site region 164154	1942 bp downstream