rs29269949 SNP Detail

Summary

• ID
  rs29269949
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:132772899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAACATT CATATTCAGA
  GAATAAAATA AAATTATTAG TTTGAAACCT GCTCAGTCTT GGGGCTGAAC AATAGAAACT
  GATTCTCTGC CAGCACACTC ATTGGGGATG CTCAATATTA ACCAACCTCA CGCGGTGTTG
  TGAACCAGTA TTTCACTTAG GTATGTGAAG AATGAAGACC ATCCAAGCAC TGAGAAATGG
  W
  TTCATAAAAA TTCTATTTGC CCTATGTTCA ATATATTTTT ATCCTAAAAA CGTGTTTCTC
  TGATTGACTG CGTCTTGTTA ATGAGGTGTT CCTTCTCCGT GAGTTTCTGA GAAGTTACAC
  AGAAAACACT GAGACCGGCT TTCACTTAAG GCTAGGAGTA TTTTGGACTC AAATGTTTTC
  TTTTTTGTGG GAGTTGGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38464231	NES09775433	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29269949					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38464231	NES09775433	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:132772899 () rs orientation: forward

Symbol	Name	Function Class
Rr2839	regulatory region 2839	702 bp proximal