rs29270229 SNP Detail

Summary

• ID
  rs29270229
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:132772045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATAATG GGGTAAAAGT
  CACTAACAAA CTCTGATCTA TTCTTAAATG TTCACAAACC AGTTAGATTA ACTATAGCTC
  TGAAGAGCCA AAACAAAAGG GAAGCAACAG CACTTGAGAA GCGACGGCAG CTCTGTTCAT
  AGACAGTGTG ACGTCAAAGC ACCACCCAAG GCAAGGCTGG GGGTAGGACA ACAACCAAAA
  M
  CAATTTTGCT GGTTCTTGCT TTGCTGCAGA TTCATCCTAC ACATTTAAGT TAATGCGATG
  GTATGAAATT GCTACCACTG TACCGCTCAC ACCAAAAGAA AGAATACAAA TTGAACAATT
  CCTGTATTAT CTTTTGCAAG GCTTTTACTT TGGCAAAGGA GGGAAGATGA AAAGGCTTAG
  AATGGGATGG GGAAGCCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38464241	NES09775410	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29270229					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38464241	NES09775410	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:132772045 () rs orientation: forward

Symbol	Name	Function Class
Rr2838	regulatory region 2838	1245 bp distal
Rr2839	regulatory region 2839	1556 bp proximal
Rr10408	regulatory region 10408	1182 bp distal