rs29270230 SNP Detail

Summary

• ID
  rs29270230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:132772034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATTCTAT TTCTTATAAT
  GGGGTAAAAG TCACTAACAA ACTCTGATCT ATTCTTAAAT GTTCACAAAC CAGTTAGATT
  AACTATAGCT CTGAAGAGCC AAAACAAAAG GGAAGCAACA GCACTTGAGA AGCGACGGCA
  GCTCTGTTCA TAGACAGTGT GACGTCAAAG CACCACCCAA GGCAAGGCTG GGGGTAGGAC
  R
  ACAACCAAAA ACAATTTTGC TGGTTCTTGC TTTGCTGCAG ATTCATCCTA CACATTTAAG
  TTAATGCGAT GGTATGAAAT TGCTACCACT GTACCGCTCA CACCAAAAGA AAGAATACAA
  ATTGAACAAT TCCTGTATTA TCTTTTGCAA GGCTTTTACT TTGGCAAAGG AGGGAAGATG
  AAAAGGCTTA GAATGGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38464242	NES09775407	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29270230					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38464242	NES09775407	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:132772034 () rs orientation: forward

Symbol	Name	Function Class
Rr2838	regulatory region 2838	1234 bp distal
Rr2839	regulatory region 2839	1567 bp proximal
Rr10408	regulatory region 10408	1171 bp distal