rs29270504 SNP Detail

Summary

• ID
  rs29270504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:132771853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGTTATCT GGTAACTTGT CATCAGATCT AAAGGCACCT
  CTTTGGTGCT CCTGTGCTAT CTTTCAAAAT CCCTATTTAA CTCAATTCTA TTTCTTATAA
  Y
  GGGGTAAAAG TCACTAACAA ACTCTGATCT ATTCTTAAAT GTTCACAAAC CAGTTAGATT
  AACTATAGCT CTGAAGAGCC AAAACAAAAG GGAAGCAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38464246	NES09775403	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C		T	C	T	C	T	T	T	T	T
ss46497365	mCV24442650	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss134466728	ENSMUSSNP3145706	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29270504					SNP	C	C	C	C	T	C	T	T	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38464246	NES09775403	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:132771853 () rs orientation: forward

Symbol	Name	Function Class
Rr2838	regulatory region 2838	1053 bp distal
Rr2839	regulatory region 2839	1748 bp proximal
Rr10408	regulatory region 10408	990 bp distal