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rs29275143 SNP Detail
Summary
  • ID
    rs29275143
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    ChrX:146267872 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGATTTTTT TGAGAAAGGA
    AGAAAGGAAG AACTCTTTGG AAAACACATA AAAGACAAAT CATTAAAACA ACTTGTACCT
    CAGATGATAC TGGAGACTGT GCGGACATAT GAGCATTATC ACTCTCTTGC TAAAATATAA
    AAATAAACAC ATGAAAGATG AAATTAAAAT ACACAATGAT GATTTTAACA TACAAAAAGA
    M
    AATGGAAGAC TGATCCTATA AAATATCCAA GGAGGAATTG ACAATGTAAA ATATAGAATC
    TTGCCACTTA AATGTTGTTG GTGAAGTACA GTACAAGTAT TCTCAGTGAA TTTGTTAGAC
    ATGAATGATC TCTGGCTCCA ACTAATAATA AATCAGATTC AATATAAGAA ACCCTAATGA
    TTTATAAGTA TTTTATAGAA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss38469065 NES09739922 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A C A A C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs29275143 SNP A A A A A A A A A C A A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38469065 NES09739922 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:146267872 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm25107 predicted gene, 25107 455 bp upstream
Lrch2 leucine-rich repeats and calponin homology (CH) domain containing 2 within coordinates
Rr5556 regulatory region 5556 729 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory