AAGATTTTTT TGAGAAAGGA AGAAAGGAAG AACTCTTTGG AAAACACATA AAAGACAAAT CATTAAAACA ACTTGTACCT CAGATGATAC TGGAGACTGT GCGGACATAT GAGCATTATC ACTCTCTTGC TAAAATATAA AAATAAACAC ATGAAAGATG AAATTAAAAT ACACAATGAT GATTTTAACA TACAAAAAGA M AATGGAAGAC TGATCCTATA AAATATCCAA GGAGGAATTG ACAATGTAAA ATATAGAATC TTGCCACTTA AATGTTGTTG GTGAAGTACA GTACAAGTAT TCTCAGTGAA TTTGTTAGAC ATGAATGATC TCTGGCTCCA ACTAATAATA AATCAGATTC AATATAAGAA ACCCTAATGA TTTATAAGTA TTTTATAGAA M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38469065 | NES09739922 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | A | C | A | A | C |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs29275143 | SNP | A | A | A | A | A | A | A | A | A | C | A | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38469065 | NES09739922 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: ChrX:146267872 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm25107 | predicted gene, 25107 | 455 bp upstream | ||||||
Lrch2 | leucine-rich repeats and calponin homology (CH) domain containing 2 | within coordinates | ||||||
Rr5556 | regulatory region 5556 | 729 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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