rs29275454 SNP Detail

Summary

• ID
  rs29275454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:146266437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTCAGGG TGACAACTCT
  GGGAAGCAGG TAGGGCCAAA ACCTCAGTTA CTTCTCTGTC ATTTACTGAC TAGGCTAATT
  GAGCAAGCAA CTGATCTTTC CCACTACAAA ATGATAAAAG TACACAAGTA GGACTATATT
  TATGTTCAAA TGAAACATAG GGGCTTTGTT AATATGATAT ACAAACAGGC TTTAGCATTT
  Y
  CTCTTTCACA TGCAACGGAA GCAGTCAGAA TTCTGCATGG TGTCAGCATC TTCTCTAGAT
  ATGCTAGGCA GCTCAGTGTG GATGTCAGGC AGAGCTACAA TACACATGGT CATCAGTCTA
  CCCATCCACA GCCTTATATG CTGTCCACAT TTGTTTGGTT AAATTGTTAT AAATTCCTGA
  ACAGGAATTC CAGTCATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38469066	NES09739921	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29275454					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38469066	NES09739921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:146266437 () rs orientation: forward

Symbol	Name	Function Class
Gm25107	predicted gene, 25107	852 bp downstream
Lrch2	leucine-rich repeats and calponin homology (CH) domain containing 2	within coordinates