rs29278247 SNP Detail

Summary

• ID
  rs29278247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:144272454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTACTT CTGAGCTACA
  GTCCAAGCCC TCCCTAGAAG TGTTCTCTCT CTCTCTCTCT CTCTCAATTC CCACCCATAT
  TCTTTTGAAA AGTGGAAACC AACCACCAAA AGGCTAATTA ACTTAGCCCA TAACTGCATT
  TCTCTCCACT CCAGTGACAC TCTGGGGTTG TTAGATTTGG ACTCAAGAGT CAAATATAAA
  R
  ACCTCTTCTG TTGCCTGAAA TTGGACAGAT GACTACCAAA TTCTTTTCTT CTAGAAAAAA
  AAAAAAAGAT GGAAACAAGA ATGTTTGTAG TTAAAGCAAA TACCACTTCC ACCCCTCTCC
  TGCAAAGCAG GAGAATGCAG ACATTGAGCT ATCCCAGACC CCATACCTTC AGAGGTATGC
  CACCCCCTCC CAGGCCACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38473909	NES09748201	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29278247					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38473909	NES09748201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:144272454 () rs orientation: forward

Symbol	Name	Function Class
Amot	angiomotin	within coordinates
Rr3195	regulatory region 3195	1654 bp distal
Rr9326	regulatory region 9326	454 bp distal
Rr9327	regulatory region 9327	within coordinates