rs29278250 SNP Detail

Summary

• ID
  rs29278250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:144271902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAACACT ACCCTACTCG
  GATCAATTTA TCAGGCATCG AAAGATTCTT TTGAGAAAAA AAAAATCACG TTAAGTACTA
  TAAGTAATCA CTAATGTTAA ACAATGCACT TTTCATTGCA AATATCTGAA AGAACTCAGT
  GTGGATGCAC ACATCACACA CAAAGTCACT GTAAAACTCA ACCTCCTGAG TCTTAGGTTT
  Y
  CAAAGGAAAA TTCTAGACTC TATCTACCAG GTGCTCTTTA TCTCTACTCT TTATCTCTAC
  GATATTATGC CACTTCCAAG CTCTCTGCAA CTCCCTTTCT TTTGTACTGC AGGGCATCCA
  AAAGGTGCAC CTCAGCAGAT GGACGTACTC AGCCTCTGGC TTTTCTTAGT CGGTGATGGT
  TATCACCAGT TGCCTTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38473912	NES09748262	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29278250					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38473912	NES09748262	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:144271902 () rs orientation: forward

Symbol	Name	Function Class
Amot	angiomotin	within coordinates
Rr3195	regulatory region 3195	1102 bp distal
Rr9326	regulatory region 9326	within coordinates
Rr9327	regulatory region 9327	299 bp proximal