rs29278774 SNP Detail

Summary

• ID
  rs29278774
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:144270834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGATAAAT CAGTCCTCTA AGGGGGAAGA ACACGTGTTC
  TTTGAAGGTG AGGGATCCAT TACAGAAACA AAACAGAGGA CTGTATTCAT AAATCATAGA
  W
  GAATTCCATG ATTATCGTCT TTACCACTGA TATGTAGAGG AACAGTTAGC CCAGCAACTG
  TTTTCTCTCT TTGATTTAAA CAATCCTGAC TTAACTTCAT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss38473916	NES09748258	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs29278774					SNP	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38473916	NES09748258	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:144270834 () rs orientation: forward

Symbol	Name	Function Class
Amot	angiomotin	within coordinates
Rr3195	regulatory region 3195	34 bp distal
Rr9326	regulatory region 9326	within coordinates
Rr9327	regulatory region 9327	1367 bp proximal