rs29280520 SNP Detail

Summary

• ID
  rs29280520
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:144133226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCACTTG GAAAACAAAC
  TGAGTGATCT GAAAAGGAAT GAACCTTGTC TGATGCTCTG CCCCGGGATA ATATCATCTC
  TCAGGTATGA GTATCCCTGG CACACTCTAC TTCTTTTTGG AGACCTATCA TCATCTCTAT
  TGTGCACTTC TGCGTGTGGC TCTTATTTCC CCTTCAGTCT AGATGCCTTG TGAAAAAGGA
  M
  CTTGACTCGA ACTAAGTTAT AAGGAAGAAG ACTTAACAGA ACAGTCTTAG TGGATCCCAA
  ATATTGATGC TTCCTGATTG CCTTCAAAAG TATGCTCTGA GCACTAGCAA TCTTGTATTT
  CTGCATCTTA CAGCAAAAGT ACACAAGGCA AAACTAAAGG AATTAGTAGT TTGATATATT
  CATTGGGCTA TAATTATTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38474362	NES09751948	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29280520					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38474362	NES09751948	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:144133226 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl1	lipoma HMGIC fusion partner-like 1	1141 bp upstream
Rr8344	regulatory region 8344	1225 bp distal
Tssr164336	transcription start site region 164336	1302 bp upstream
Tssr164337	transcription start site region 164337	1286 bp upstream