rs29280521 SNP Detail

Summary

• ID
  rs29280521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:144133163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAAATAG GAGTAGAGCC
  AAACATCAGT GCCCAACTTA TCTAACAGCA CAGGAACTGC CCTTTTCCAC TTGGAAAACA
  AACTGAGTGA TCTGAAAAGG AATGAACCTT GTCTGATGCT CTGCCCCGGG ATAATATCAT
  CTCTCAGGTA TGAGTATCCC TGGCACACTC TACTTCTTTT TGGAGACCTA TCATCATCTC
  Y
  ATTGTGCACT TCTGCGTGTG GCTCTTATTT CCCCTTCAGT CTAGATGCCT TGTGAAAAAG
  GAACTTGACT CGAACTAAGT TATAAGGAAG AAGACTTAAC AGAACAGTCT TAGTGGATCC
  CAAATATTGA TGCTTCCTGA TTGCCTTCAA AAGTATGCTC TGAGCACTAG CAATCTTGTA
  TTTCTGCATC TTACAGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38474363	NES09751945	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29280521					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38474363	NES09751945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:144133163 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl1	lipoma HMGIC fusion partner-like 1	1078 bp upstream
Rr8344	regulatory region 8344	1162 bp distal
Tssr164336	transcription start site region 164336	1239 bp upstream
Tssr164337	transcription start site region 164337	1223 bp upstream