rs29280945 SNP Detail

Summary

• ID
  rs29280945
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:144132342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTAGA TGTCTGCCTC TGTCTCCTCT GTCTGCCTCC CTCCCATCTT
  CCCTCCACCT TCCCCCTTTC TCTCCTTCTC TCTCTCTGCT TCCCCCTCCG CCCTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTAG CCACTCTATG
  K
  CTCTTCCTCA CTTGCTGAAT GGCAGCTGTG GAACAGAGGT TCTCCCTAAC TTTTCCCCGA
  ACACCCAAAT AATCTCGACC ACAAGTATTA GGCACTCTGG GGCAGAGGGT GGTAGACTGA
  GAGAATAGAA TTTTCCCTCA AACTGTTATC TATTGTTTTG GGGAAAATAA TACTCTGATA
  GAGAAATTTG TGACTCTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38474367	NES09751972	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29280945					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38474367	NES09751972	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:144132342 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl1	lipoma HMGIC fusion partner-like 1	257 bp upstream
Rr8344	regulatory region 8344	341 bp distal
Tssr164336	transcription start site region 164336	418 bp upstream
Tssr164337	transcription start site region 164337	402 bp upstream