rs29280948 SNP Detail

Summary

• ID
  rs29280948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:144130430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCCCAG TGCCCTATCT
  TCAGTGGTGG TCTGTTTGTG TAGGGAATTT CCCACAGACT ATCAGGCCAT TCTAAGCTGC
  CCCTCAGTTG CTCTTTCAAG ATAAGGATAA AGCCTTAGCG ACAAGGGAAT GAATGATTGG
  AAAGGCATGC ATTTTCCACC ACCTTTAGGT TCATAACTAC ACCATGCTAT TGCTATGCAG
  Y
  GAACCTTCTA TTCCAGGTCC TCAGAATAAA ATGCCACCAC AGCTAACTAG AAGGCAGGTG
  AAATGGTTTT GCACTCAGTT CAAAATAGCT AGGATGCTGC ATGGCACAGG AAAAAAAAAG
  TCTCTGAATG AAGAGCTCTC TAACTCCCCT GCATCAAAAT CACTCTAGAT GCTTTTTCAA
  AGTAGAAATT GTGATCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38474370	NES09752027	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29280948					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38474370	NES09752027	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:144130430 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl1	lipoma HMGIC fusion partner-like 1	within coordinates
Rr8344	regulatory region 8344	1170 bp proximal
Tssr164336	transcription start site region 164336	1460 bp downstream
Tssr164337	transcription start site region 164337	1498 bp downstream