rs29280949 SNP Detail

Summary

• ID
  rs29280949
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:144130347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTTCTC CTGATCCTAA
  AATGCCACTT CCTGAACACT TATCTGTCTA TGCTTTATCA AACAGAGAGG AATCTAGTTG
  CACAGAATCC CAGTGCCCTA TCTTCAGTGG TGGTCTGTTT GTGTAGGGAA TTTCCCACAG
  ACTATCAGGC CATTCTAAGC TGCCCCTCAG TTGCTCTTTC AAGATAAGGA TAAAGCCTTA
  K
  CGACAAGGGA ATGAATGATT GGAAAGGCAT GCATTTTCCA CCACCTTTAG GTTCATAACT
  ACACCATGCT ATTGCTATGC AGTGAACCTT CTATTCCAGG TCCTCAGAAT AAAATGCCAC
  CACAGCTAAC TAGAAGGCAG GTGAAATGGT TTTGCACTCA GTTCAAAATA GCTAGGATGC
  TGCATGGCAC AGGAAAAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38474371	NES09752026	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29280949					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38474371	NES09752026	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:144130347 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl1	lipoma HMGIC fusion partner-like 1	within coordinates
Rr8344	regulatory region 8344	1253 bp proximal
Tssr164336	transcription start site region 164336	1543 bp downstream
Tssr164337	transcription start site region 164337	1581 bp downstream