rs29281468 SNP Detail

Summary

• ID
  rs29281468
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143119998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCATAAG AAAACGATTT
  ATAGCTTGTA CCCTTACAAG TTGAAAGTTG AGGTTGAAAG TCCAGGATAG AGTCATTAGC
  CCTTAATCTC AATAAAGATG ACCATTTTTT AACATAAGGA GGCATGGCTT CTTTGCCTTT
  GCCTAAGATC AGGTGTAGTA GCAGCTGCAC TTAATTTCTC TGTTTCCAAC ATGTGCTCTA
  S
  TTTAGGAAAC TTGTGTCTAA TTCATTGTCT TAATTTAGGA ACGTCTATTT GAAATGACAT
  GGCAGTGAGC TAGTCTTTTT TTTTTATAGT TGTTTCACAG CCAGATCCAT CATTTACAGA
  TCAGGAGAGC TTGTGTCTCA TATATGAAGG AAAACCAACA AGCTTTTGAG TCTGTAAGTA
  GAATATATGC ACTGAAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38476610	NES09755032	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29281468					SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38476610	NES09755032	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143119998 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	413 bp downstream
Rr395739	regulatory region 395739	622 bp upstream
Rr694213	regulatory region 694213	1326 bp proximal
Tssr162278	transcription start site region 162278	1171 bp downstream
Tssr162279	transcription start site region 162279	1075 bp downstream
Tssr162280	transcription start site region 162280	1003 bp downstream
Tssr162281	transcription start site region 162281	979 bp downstream
Tssr162282	transcription start site region 162282	948 bp downstream
Tssr162283	transcription start site region 162283	926 bp downstream
Tssr162284	transcription start site region 162284	910 bp downstream
Tssr162285	transcription start site region 162285	894 bp downstream
Tssr162286	transcription start site region 162286	864 bp downstream
Tssr162287	transcription start site region 162287	852 bp downstream
Tssr162288	transcription start site region 162288	833 bp downstream
Tssr162289	transcription start site region 162289	805 bp downstream
Tssr162290	transcription start site region 162290	773 bp downstream
Tssr162291	transcription start site region 162291	305 bp downstream