rs29281471 SNP Detail

Summary

• ID
  rs29281471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143119750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGAAAC AAGTATGTAT
  TTTCTGTTTC TTAGTGAAAG TATCCAGGCC TTGAGAAGTA CAGATTGGAA TACTGTGCTG
  TTGTTGATTA GAGCAAATAC GGTTCTCCTG TGGCTACTTT TTTTTTTTTT TTTTTTTTTT
  TTGCTTTTCA TTGCCAGTTT GTAATCGGGG AGGGGTACAT TAATGTGAGG TTAAGGAAAA
  Y
  ATTGAAATTA ATCTCAGTCC TTGGTAAGCA TGCCCTACTC CTTTGTTTAT GCATAAGAAA
  ACGATTTATA GCTTGTACCC TTACAAGTTG AAAGTTGAGG TTGAAAGTCC AGGATAGAGT
  CATTAGCCCT TAATCTCAAT AAAGATGACC ATTTTTTAAC ATAAGGAGGC ATGGCTTCTT
  TGCCTTTGCC TAAGATCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38476613	NES09755029	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29281471					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38476613	NES09755029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143119750 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	165 bp downstream
Rr395739	regulatory region 395739	870 bp upstream
Rr694213	regulatory region 694213	1574 bp proximal
Tssr162278	transcription start site region 162278	923 bp downstream
Tssr162279	transcription start site region 162279	827 bp downstream
Tssr162280	transcription start site region 162280	755 bp downstream
Tssr162281	transcription start site region 162281	731 bp downstream
Tssr162282	transcription start site region 162282	700 bp downstream
Tssr162283	transcription start site region 162283	678 bp downstream
Tssr162284	transcription start site region 162284	662 bp downstream
Tssr162285	transcription start site region 162285	646 bp downstream
Tssr162286	transcription start site region 162286	616 bp downstream
Tssr162287	transcription start site region 162287	604 bp downstream
Tssr162288	transcription start site region 162288	585 bp downstream
Tssr162289	transcription start site region 162289	557 bp downstream
Tssr162290	transcription start site region 162290	525 bp downstream
Tssr162291	transcription start site region 162291	57 bp downstream