rs29281473 SNP Detail

Summary

• ID
  rs29281473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143119471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCTCTT TTCCACCCCT
  CTCTACCTTT CTCATCATCC CATGCACAAT GCAAAAAGGA TGGAAAAAGT ACTGCGGCCA
  GAAGTCTTTG AATGAGGCAT CAATGGATGA ATATTTAGGC AGTTTAGGGC TGTTTCGAAA
  GGTGGTTGCC AAGGATGCCT CTTGCCTCTT TCGTGCTATT TCCGAGCAGG TAAATATAAG
  Y
  GTGACAAATG GATGATGTTT TGTTTTAAGA TTTCAGGGTG AGATGTGGTG TGGTCCAGTA
  GTTCAATCTG TAGAGTAATG AAAGAAACAA GTATGTATTT TCTGTTTCTT AGTGAAAGTA
  TCCAGGCCTT GAGAAGTACA GATTGGAATA CTGTGCTGTT GTTGATTAGA GCAAATACGG
  TTCTCCTGTG GCTACTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38476615	NES09755027	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29281473					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38476615	NES09755027	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143119471 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	within coordinates
Rr395739	regulatory region 395739	1149 bp upstream
Rr694213	regulatory region 694213	1853 bp proximal
Tssr162278	transcription start site region 162278	644 bp downstream
Tssr162279	transcription start site region 162279	548 bp downstream
Tssr162280	transcription start site region 162280	476 bp downstream
Tssr162281	transcription start site region 162281	452 bp downstream
Tssr162282	transcription start site region 162282	421 bp downstream
Tssr162283	transcription start site region 162283	399 bp downstream
Tssr162284	transcription start site region 162284	383 bp downstream
Tssr162285	transcription start site region 162285	367 bp downstream
Tssr162286	transcription start site region 162286	337 bp downstream
Tssr162287	transcription start site region 162287	325 bp downstream
Tssr162288	transcription start site region 162288	306 bp downstream
Tssr162289	transcription start site region 162289	278 bp downstream
Tssr162290	transcription start site region 162290	246 bp downstream
Tssr162291	transcription start site region 162291	219 bp upstream