rs29281714 SNP Detail

Summary

• ID
  rs29281714
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:144275190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCACAGAG TGCCTTTGAG
  GATATTGGAT GGGAGACAAA AGGAAATACC TAGCTCTGTC TTTAAAAGTG CAAATATAAA
  TCCATATATT CAGCTCCTCT GTAACAGCAA GGCAGCAAGG TGAAGGTCAA TTCTTACTCC
  ATTTGCAGCC ACTATTCTCT CCCCCGAATA ACTAGAGGTT GAGCTTAGCA CATTAGTGAG
  S
  GCTCAGGTAT CTCCCAAGCC AAGACACAGC AAATGAACAT TACCAGGTAG CCAGAAAAAA
  CATACTTTTG CCCTTTAAAT GAATTTTCAA TAAGCCTATT AGGTCTTTCC AACTCTTGCT
  CTACTTCCTC TCCTTTCAGC CTCCACTTTA CTACAAACAA GGATGGAAAA CCTCGTCTAG
  GAAACCTTCT TCCTCTGTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38473886	NES09748148	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29281714					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38473886	NES09748148	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:144275190 () rs orientation: forward

Symbol	Name	Function Class
Amot	angiomotin	within coordinates
Rr9327	regulatory region 9327	1391 bp distal