rs29281985 SNP Detail

Summary

• ID
  rs29281985
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143118839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTAAATT ACTTGATTTT
  ATTATCTTAG CTGAAATAGG CAAGCAGTTG CTTGAGAGTC TTTGTTCCAA CAGATGGAGG
  TCCCGCCCCT TTTCTTTGTC TTTTAAAAAA GGTGTTCTTA AATACTAAAG CGAACTAGTT
  AAATAACTCC CCCACCCCTA CTTCCCTGAA ACTCTGGTGG GCACCTGTAG GACAGAAACC
  W
  TTTGGGAATT CAGGGAGTGA TCTCAAAGCT CTTTGTGTGG AGTAGGCTGT TTTACACACG
  TGAGTCTTTT TGTAATTTCC TTTGCTGCCT CTTGAAGTAG CTTTCCGGAG CTCTTTAGAT
  TTCCAGAGTT CAGCTGCTTA GTCCCTCTTT ATGCCTTGAG CTGATTTTGT GGTCCCACCT
  TTCTGTAACT GTTTCCCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38476617	NES09755025	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29281985					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38476617	NES09755025	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143118839 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	within coordinates
Rr395739	regulatory region 395739	1781 bp upstream
Tssr162278	transcription start site region 162278	12 bp downstream
Tssr162279	transcription start site region 162279	60 bp upstream
Tssr162280	transcription start site region 162280	93 bp upstream
Tssr162281	transcription start site region 162281	173 bp upstream
Tssr162282	transcription start site region 162282	204 bp upstream
Tssr162283	transcription start site region 162283	222 bp upstream
Tssr162284	transcription start site region 162284	236 bp upstream
Tssr162285	transcription start site region 162285	252 bp upstream
Tssr162286	transcription start site region 162286	281 bp upstream
Tssr162287	transcription start site region 162287	304 bp upstream
Tssr162288	transcription start site region 162288	321 bp upstream
Tssr162289	transcription start site region 162289	345 bp upstream
Tssr162290	transcription start site region 162290	369 bp upstream
Tssr162291	transcription start site region 162291	851 bp upstream