rs29281987 SNP Detail

Summary

• ID
  rs29281987
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143118343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTAACATT TTAAAACACA CCTAACATGT CCAACATGTC
  AATATGCCAT CAAAAAACCC CACAAAATTT AAATTGCATT TTTGACAGTT TCTGTGTAAG
  M
  TATTTTGTGC TGATTCAATT TTACACATTG TAAAGATTTA TTTTTAAATA TCTTTGCTTT
  TGAGGGTATG CACATGTGGG TGCAGATGCA CATGGATACT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38476619	NES09755023	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29281987					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38476619	NES09755023	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143118343 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	within coordinates
Tssr162278	transcription start site region 162278	440 bp upstream
Tssr162279	transcription start site region 162279	556 bp upstream
Tssr162280	transcription start site region 162280	589 bp upstream
Tssr162281	transcription start site region 162281	669 bp upstream
Tssr162282	transcription start site region 162282	700 bp upstream
Tssr162283	transcription start site region 162283	718 bp upstream
Tssr162284	transcription start site region 162284	732 bp upstream
Tssr162285	transcription start site region 162285	748 bp upstream
Tssr162286	transcription start site region 162286	777 bp upstream
Tssr162287	transcription start site region 162287	800 bp upstream
Tssr162288	transcription start site region 162288	817 bp upstream
Tssr162289	transcription start site region 162289	841 bp upstream
Tssr162290	transcription start site region 162290	865 bp upstream
Tssr162291	transcription start site region 162291	1347 bp upstream