rs29281989 SNP Detail

Summary

• ID
  rs29281989
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143117658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAAGCTT TAATTTGTTG
  TTCTTAGTGA ATTGGTCGTC CCAGAACTTT TGCAAAAAAA AAATTCTAGT TTCTTTAGAA
  AAAAAAATAT GAAAACTGAA TGGTAAGGAA AGTCGAGGTT TTATTCTATA TCTACCATGA
  TTTTATTTCA TCCATAATTT ATAAGTAATG ATCCATGATT TTCCTTATAG ACTGAAGTAT
  M
  CAAGAGTAAG ATAAATAGCT GCTGCCAGGC AGTGGTGGCA CACACCTTTA ATCCCAGCCC
  TCAGGAGGCA GAGACAGGCG GATTTCTGAG TTGGAGGCCA GCCTGGTCTA TGGAGTGAGT
  TCCAGGACAC CCAGGGCTAC ACAGAGAAAC CCTGTCTCGA AAAACAAAAA AACCAAAAAC
  AAAAAAGATA AAAAAGCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38476621	NES09755061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29281989					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38476621	NES09755061	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143117658 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	325 bp upstream
Tssr162278	transcription start site region 162278	1125 bp upstream
Tssr162279	transcription start site region 162279	1241 bp upstream
Tssr162280	transcription start site region 162280	1274 bp upstream
Tssr162281	transcription start site region 162281	1354 bp upstream
Tssr162282	transcription start site region 162282	1385 bp upstream
Tssr162283	transcription start site region 162283	1403 bp upstream
Tssr162284	transcription start site region 162284	1417 bp upstream
Tssr162285	transcription start site region 162285	1433 bp upstream
Tssr162286	transcription start site region 162286	1462 bp upstream
Tssr162287	transcription start site region 162287	1485 bp upstream
Tssr162288	transcription start site region 162288	1502 bp upstream
Tssr162289	transcription start site region 162289	1526 bp upstream
Tssr162290	transcription start site region 162290	1550 bp upstream