rs29281990 SNP Detail

Summary

• ID
  rs29281990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143117459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTGTGTA CTTCTCTTTT
  TCTTGTCTTT CTCATCTTTG TTTCTAGGTT TTGCTTATAT TCTGATTATC TTCCTGGCCC
  TTTCCCTTGG AAGTATATTA ATAGTATTTG TTGAAGTTTT ATATTCATGT TTAATGTTCA
  GTAGATGTAA ACAATTTGTA TTTTGTCTTT ATTTGTAGAA TATGACAAAA TCGACTTAAC
  Y
  GTAAGCTTTA ATTTGTTGTT CTTAGTGAAT TGGTCGTCCC AGAACTTTTG CAAAAAAAAA
  ATTCTAGTTT CTTTAGAAAA AAAAATATGA AAACTGAATG GTAAGGAAAG TCGAGGTTTT
  ATTCTATATC TACCATGATT TTATTTCATC CATAATTTAT AAGTAATGAT CCATGATTTT
  CCTTATAGAC TGAAGTATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38476622	NES09755060	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29281990					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38476622	NES09755060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143117459 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	524 bp upstream
Tssr162278	transcription start site region 162278	1324 bp upstream
Tssr162279	transcription start site region 162279	1440 bp upstream
Tssr162280	transcription start site region 162280	1473 bp upstream
Tssr162281	transcription start site region 162281	1553 bp upstream
Tssr162282	transcription start site region 162282	1584 bp upstream
Tssr162283	transcription start site region 162283	1602 bp upstream
Tssr162284	transcription start site region 162284	1616 bp upstream
Tssr162285	transcription start site region 162285	1632 bp upstream
Tssr162286	transcription start site region 162286	1661 bp upstream
Tssr162287	transcription start site region 162287	1684 bp upstream
Tssr162288	transcription start site region 162288	1701 bp upstream
Tssr162289	transcription start site region 162289	1725 bp upstream
Tssr162290	transcription start site region 162290	1749 bp upstream