rs29281992 SNP Detail

Summary

• ID
  rs29281992
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143116979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATGCAGC TATTCTTATC
  CTCATTTGTA ACTCAGAACA AAAGTTAATT TTGTAAAAGT TCAATCTGTA TGCTTTTTAA
  AAATAATTTT GCCTATCCTA TGGGTCTTGA ATGTTTTTCC TTAAGACATT TTAAAGAACT
  TTTACACATT GATTTCCAAA TAATTGTAGT TCAGAAGTTA AACTCTACAG TACAAAGGGC
  M
  TAGGGAGGCT CCCTTGCAGG TTCTCTCTTG CTGCCTTAAC CCCTTCTTGG GAGGCAGCTG
  GTGAAGGATG AATAAAGCTT TGATTTGACA TCTAGATCTG GTCTGCTTTG CATGAATTAA
  GAAAACAAGA TGTGAGATTC AGGTCTAGGG CTACTTTTTG CATTATGAAT GATTGATTCT
  TGAACTATCT GATATAAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38476624	NES09755082	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29281992					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38476624	NES09755082	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143116979 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	1004 bp upstream
Tssr162278	transcription start site region 162278	1804 bp upstream
Tssr162279	transcription start site region 162279	1920 bp upstream
Tssr162280	transcription start site region 162280	1953 bp upstream