rs29282102 SNP Detail

Summary

• ID
  rs29282102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:144273021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCTGCT TTCTTTTAGG
  CTTAAAGCCT TGATCAGGAT AGGGAACTCT TGCTTATGAG CAGCTCCAGA GACCGCAGAG
  GCAGATTCCC TCTCCCCTAA CACTCAGGTT CAGGGTAAGC GCCGGCAAGA GTCCAACCAC
  TGGTCAGTCT GAAATGTTCA GGAGGGGTGG GGAGGAGAAA TAAAAATGTC GTTTCTAAAT
  Y
  GCCACCAAGA GCCAGCAGTT AACCAAACTG CTCCTTCCAA GGGAAAGTGT TGTCTCGTGT
  GGCTTGGCTT TTTAAGTCAG TGGCAAGGGC TATCTACACT AGGGCAGAAA GCAAACCTCA
  CTGTTTATCA GGGGTATACA GGAGGTCATT CCAGTCTCTA AGAGACAAAG GCTAAAGTGT
  GACCCTTGAA AGTACTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38473904	NES09748170	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29282102					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38473904	NES09748170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:144273021 () rs orientation: forward

Symbol	Name	Function Class
Amot	angiomotin	within coordinates
Rr9326	regulatory region 9326	1021 bp distal
Rr9327	regulatory region 9327	within coordinates