rs29282546 SNP Detail

Summary

• ID
  rs29282546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143131632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTATGTT ATTATCTTTT
  TTTAAAGATT TATTTACTAT ATATCTAAGT ACACTGTAGC TGTCTTCAGA CACACCAGAA
  GAGGGCATCA GATCTTGTTA CAGATGGTTG TGAGCCACCA TGTGGTTGCT GGGATTTGAA
  CTCAGGATCT TCTGAAGAGC TGTCAGTGCT CTTAACTGCT GAGCCATCCT TCCAGCTCAT
  R
  TTGTTATCTT TTATTTTGAG ACAATCTTAA CTAGTTGTGC AGGCAGCTTT GATCTTGTAG
  TCAGTGTCAG GCTAGAGGAT TTGTTCTAAA ACAAGCTTTT ATAATCCCAG ACAAGAAAAA
  AGTGAGGCCA CGACACAGTG ATACTTTGTA AAGGATACCT TATTTTTTAT CGGTCAGAGT
  AACTGTAATT TATATACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38476572	NES09754539	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29282546					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38476572	NES09754539	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143131632 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates