rs29282548 SNP Detail

Summary

• ID
  rs29282548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143131085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAAGCAC AGATTTGTCA
  GTAGACAAGA CCAGATATAT TAATATAAGA CTCCCTTTTC CGGTCTTTCA GGTTTGCATG
  GAATCAGGTG GAAAATATTA TAATGCTCAC ATTCAGGAAA TTGATAATGA TAAAAGTTCA
  GTAGTAGTTT TCATTGAGGA ATTTGCAGAA AGGTAAGACT GTATAGAAAT TAAAATTGCC
  R
  GGTGCTTACT CATATTAAGT TGAGAATTTC CAGGATGCTA GTTGAGAGAA CCAGAATTAT
  TATCTGCTGA GCTAATTATT TTGATTAATA AAAGTAAATG TTAAAAAATG AAATACCAAA
  ATAGGTGTAT CCCCCAGCCC TTGCTATTAT TTTTTTTTAA AAGTATTTTA TTTTTGAGAT
  GACAATATAA TTATATCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38476574	NES09754569	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29282548					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38476574	NES09754569	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143131085 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates