rs29283899 SNP Detail

Summary

• ID
  rs29283899
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141466613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGTCTG CTCTCGGGGT
  GAGGTCAGCT TTTAGGTTGT AAGATACTTG AGCAACCTAA TTTCCTCACA GGCTGGAGAT
  CGCGATCCCG TGTGAGAGGG GTTTTCCTTT TTTCAAACTT CTCCATCTTA CCACTTGAAG
  TCTCCGTCCT ATGCTCCAAG GGTGTTCAAG AAAGCTGACT TCTTTTGCTT CCCTGACCTC
  W
  TACCCATTAA GCTATGCTAA GACAAGCAAA TGGGATTGAT AGGGGAAGTT GCCAGCTGGG
  TACCAGTAAT CTGTTCTTTC CTAGGCCTGC TCAGGGAAGT TCTGAGGCTC TAACTTCCTG
  CAGCTTGAGG AGAAAAGGAA GAAAGGGAAG GCAATCAGGA CTTTTAGATT CCAGGCTGTG
  GAAAACTTTG CTTGTTTGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38481311	NES09751732	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29283899					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38481311	NES09751732	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141466613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22978	CpG island 22978	1493 bp distal
Tmem164	transmembrane protein 164	within coordinates
Tssr162240	transcription start site region 162240	1746 bp downstream
Tssr162241	transcription start site region 162241	1717 bp downstream