rs29283903 SNP Detail

Summary

• ID
  rs29283903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141466327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTGAAC CCTAGAAATG
  ACTTGCACTT GGAGCCCCAT GCCCCTCCCA TCTCAGCTCT GCTGGGGCCT GGCCTTTTCA
  CCAGCAGGAA GTCCAGCCCC AGCTAGGTGA CCATTCAGGA TCACATCTGT GGCGCATGGC
  CAGCACTCCT GCCTTTTGTA GTAGTTTCCC AAGGGGCCTG GTGACAGGCT TTCCTGGAGG
  Y
  GGTGGTCACA CAAGCTTCTT TGTCTCCACT GTGGTACATT GGGGGGAATA GTTTTAGGGG
  TTTCTCTTAA TGACTCTTTC ATTTCAGGGT GTCTGCTCTC GGGGTGAGGT CAGCTTTTAG
  GTTGTAAGAT ACTTGAGCAA CCTAATTTCC TCACAGGCTG GAGATCGCGA TCCCGTGTGA
  GAGGGGTTTT CCTTTTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38481315	NES09751728	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29283903					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38481315	NES09751728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141466327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22978	CpG island 22978	1207 bp distal
Rr694100	regulatory region 694100	1595 bp distal
Tmem164	transmembrane protein 164	within coordinates
Tssr162239	transcription start site region 162239	1892 bp downstream
Tssr162240	transcription start site region 162240	1460 bp downstream
Tssr162241	transcription start site region 162241	1431 bp downstream