rs29285217 SNP Detail

Summary

• ID
  rs29285217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141401554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAAAAAA AAAAAAACCT
  TCCATGACAC CAGCTTCTTT TAACTCTCTT CCCATCTGCT ACATCCAACT ATCTTCAATG
  CATCTAACCA TAGAAGAAAA CAGTAACAAA CATTAACAAA TGACTGGTTT GGGACAAATT
  CGTCCCCCCT TCTGAAAAAG AAAAAGGACC AGGAAATACA GAGGTCCTGT AGAGCACTCC
  Y
  ACTTCCTGTT CCTAGACTGG CTGGGTTATA TCACAGCTGT GAGCAGGAAA AGCAACAAAT
  GCTATTTAAT ACAGTTGTGG TGCCAAGATC CTGAGCCACC AGTAAGTCCA TGTTCTTGGC
  TTGGCTTTTT TTATATGCTT GAATAGATTT TTTTGGTCAA GAATTAGGAG ACCCAAGAAT
  GACTATGTGA AAGCAGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38481439	NES09752700	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29285217					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38481439	NES09752700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141401554 () rs orientation: forward

Symbol	Name	Function Class
Rr5507	regulatory region 5507	within coordinates
Rr9283	regulatory region 9283	1573 bp distal