rs29288360 SNP Detail

Summary

• ID
  rs29288360
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141175135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCC TCCAACAAAC CTAGAGTTTC
  S
  TAATGGAATT AAAACAAAAG TACCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38482153	NES09760519	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29288360					SNP	G	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38482153	NES09760519	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141175135 () rs orientation: forward

Symbol	Name	Function Class
Acsl4	acyl-CoA synthetase long-chain family member 4	1604 bp upstream
Cpgi22977	CpG island 22977	1249 bp distal
Gm61820	predicted gene, 61820	833 bp downstream
Rr8330	regulatory region 8330	734 bp distal
Tssr162237	transcription start site region 162237	1408 bp downstream
Tssr164293	transcription start site region 164293	1794 bp upstream
Tssr164294	transcription start site region 164294	1776 bp upstream
Tssr164295	transcription start site region 164295	1711 bp upstream
Tssr164296	transcription start site region 164296	1693 bp upstream
Tssr164297	transcription start site region 164297	1619 bp upstream
Tssr164298	transcription start site region 164298	1558 bp upstream
Tssr164299	transcription start site region 164299	1525 bp upstream